...What.
This is funny.
But what happens to Keine?
Good question. She's probably still in Gensokyo. Even without Mokou, she is a school teacher and she does protect the human village. Though truth be told, I really don't know.
When I 1st saw the title, I thought this would be so bad that it would be good. :V Then I read it and it turns out that it's not bad at all, and actually pretty good
I would be more then happy to read the next part, if and when you put it up 
When appears to be now

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Several Rattata kabobs later, Cirno and Mokou found themselves knocking on the door of a large ranch.
?Welcome!? greeted a large, elderly man. ?Mokou and Cirno, correct?
?Yep, that?s me!? Cirno glowed.
?I?m Professor Oak. As you know, wild pokemon live in tall grass, so it?s unsafe? where did you get those kabobs??
?In the tall grass.? Mokou replied cooly.
??Well, it?s still unsafe to journey without a pokemon for protection. Come in and choose your first pokemon.?
Oak invited the two girls into a large room with many unusual machines. On the table were three red and white balls. Professor Oak picked up one of the balls and opened it, after which a green plant-like creature came out.
?So would you like the grass pokemon Bulbasaur??
?Nah? the two replied in unison.
?Would you like fire pokemon Charmander??
?I?ll go with that one? Mokou decided.
?Or the water pokemon Piplup??
?PENGUIN!? Cirno shouted and started hugging Piplup.
?Wait, I thought that the third one was always a turtle.?
?Well, usually it is, but we had a mixup with the most recent shipment? Oak grumbled as Mokou wondered to herself how much trouble Yukari caused here. By this time the Piplup was looking none too pleased with its new trainer, but Cirno seemed too smitten by the penguin to notice the gashes it was pecking onto her face.
?This is my invention, the pokedex. It?s a high tech encyclopedia for pokemon trainers. I?d like you to each take one with you. Use it on the pokemon you encounter, it could save your life? to which Mokou chuckled under her breath.
?Hey Mokou, let?s battle? A very bloody Cirno requested.
?Your Pokemon looks rather worn out.? Indeed, the Piplup was bent over gasping for breath.
?Penguin, use peck!? Piplup lumbered towards Charmander, preparing it?s attack
?But I don?t know what to do.?
?Call an attack!?
?Um, Charmander, burn it with your tail??
But before Piplup could reach Charmander, the Penguin gasped one last time for breath, and fell over in exhaustion. A silence fell over the room. Then, still slightly speechless, Oak was the first to break the silence.
?Piplup? is unable to battle. The winner is Charmander!?
?Awe, you got lucky Mokou. Next time I?ll win for sure!?
?The power of love backfires again.?
?You should heal your pokemon at a pokemon center after tough battles?? Oak cut in, summarizing the basics of being a pokemon trainer. Oak then saw the two new pokemon trainers off, skeptical that the two could last a week on their own. And while fashion has been going downhill in the region for years, he had to admit that Cirno was the only trainer to come to him wearing fake glass wings. Most the others wore plastic.
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At Sandgem town, Professor Rowan greeted two new trainers
?So would you like the grass pokemon Turtwig??
?Nah? the two replied in unison.
?Would you like fire pokemon Chimchar??
?I?ll go with that one? Barry decided.
?Or the water pokemon Squirtle??
?TURTLE!? Dawn shouted and started hugging Squirtle.